Scaffold Ga0233428_1001534

Overview

Basic Information

• Taxon OID: 3300022888
• Scaffold ID: Ga0233428_1001534
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 24229
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (87.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021865	Metagenome / Metatranscriptome	217	Y
F027660	Metagenome / Metatranscriptome	194	Y
F037681	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233428_100153413	F037681	N/A	VPILFTIKVQGGHMTQEEMEVKREDLYKSWGYNKTEKLPYGTHMWLAPEKEFRQNPYSGVKVELNPVELAIYDRLMASYHEHIELGNIGDYGEARKLYKDFNDGKYWFIENNIDAYMALI
Ga0233428_100153416	F021865	AGGAGG	MRCKCCDKLLTEWESKAKDPTDRTKYLDLCSVCKYHSSPYSWLDDEDTLKKEDISVDSG
Ga0233428_100153425	F027660	AGGAGG	MALTLNELKERIVQENIDPCTLCEVLDITTEDILHEFEDKLIDKREEFEDVDDTN