Scaffold Ga0222662_1006195

Overview

Basic Information

• Taxon OID: 3300022885
• Scaffold ID: Ga0222662_1006195
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #600
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3478
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001864	Metagenome	624	Y
F009218	Metagenome / Metatranscriptome	321	Y
F012594	Metagenome / Metatranscriptome	279	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222662_10061952	F001864	GAG	MNKYRFEIDTDNAIRIWDNETPNEGDAPFMFQPDWPDVTPWADAAEATDWAEVFIASLVDPLSEFVAGNSPDTHPAIRPEPVEEEI
Ga0222662_10061953	F012594	GAGG	MPVISTGVTVGTSITAVSGPFISSKVVYLQSGTEGAATYVGGSDVSASTGILLSETNNAVFQTNADDTLYCISDTGGAVVKVVEVK
Ga0222662_10061956	F009218	N/A	MFDGVFFLKDEPESATGASWKFRRKLIFGSYRLGFAMIIFGSLTFLVDQWGVGVTLITGGVSLISIITTAYTVSASWQDGKNNQDWTNGDV