Scaffold Ga0224545_1001377

Overview

Basic Information

• Taxon OID: 3300022881
• Scaffold ID: Ga0224545_1001377
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4946
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0471
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001718	Metagenome / Metatranscriptome	647	Y
F008141	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224545_10013773	F008141	N/A	MGAALTLVRQAQITMLVSIVLYAFAGEMIARKPAHDPDNALFHALSLVSITLVGASLVVRRTLVLPSEALLRDRFDDRVSVSRWRTGYLFLYALCELLGIFGLILRMAGFTLANVWGFYLGGFLLLLLYSPRAPRAAVR
Ga0224545_10013778	F001718	GGA	MASDLNALLPNTKSRADGFCYFLAVASGVGAGWLDITVGDLLLTAMVVLAANMLLGFLSPRQPWRWVLLVGVFVPVVEWLAYFFLSEKPERAQIYESFLAFVPGIAGAYGAAVGRGVVDNLFPKK