NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224545_1000650

Scaffold Ga0224545_1000650


Overview

Basic Information
Taxon OID3300022881 Open in IMG/M
Scaffold IDGa0224545_1000650 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7391
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0471Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001643Metagenome / Metatranscriptome659Y
F020070Metagenome226Y
F048483Metagenome148Y
F061167Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0224545_100065011F061167GAGGVVTTTKGADALALMRRQSFDALVMDFTQETVDIINFTTKACGLQPSLAVFLADEWGDELATGLEELSHVLTMLEDDELARLKVESRTA
Ga0224545_10006504F001643GGAGMLGESMNFPTDTLIDMLYIILAGEVAISASDAGEIEQIQRELQRRGGEQCWSFQTVN
Ga0224545_10006505F020070GGTGGMPASNTYVRSASVALPSADGCRASSVVAFGCVLLLIGAYCFCPSVFAQTSDSPTAEEPTNSWTATTDLKSDDLIPERIPVRIIESHSQNANRTLDKRSVEIRGTDGHFEPYQAVERETLTVDASTVRTTLRTFARDVNGMKALVQVTEEEKHILPGDDSNIVRVTYNPDVNGRLQPVQREIVETKKIGKDLEETNTTVMLPSVNGGLAPAFKTHELRKRAANHTVETEKTTWLPDGNGRWQLSETRQNITTEEAKDRRIEERVFRPDAEGKLGQISRVVSQESESTSGEKRSVVETYSIDVPGTTQDGSLHLVERKTSTRSSSSTGERATEQKVEQTNPGDPGPGLRLSVLVDGRIVPGPAGEQSTVTIRARDSNGNLGIVSVDTTKADRIPTIQVQQTPAEKP
Ga0224545_10006506F048483AGGAGGMCSPMLTVQAAPTNASFVQACCDIPPVHEKYEAEFIPLHMNWVLVDDTKGNPRAQMRWVVDR
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