NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224527_1010006

Scaffold Ga0224527_1010006


Overview

Basic Information
Taxon OID3300022877 Open in IMG/M
Scaffold IDGa0224527_1010006 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2689
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005296Metagenome405Y
F009261Metagenome320Y
F012316Metagenome281Y
F047435Metagenome149N
F093078Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0224527_10100062F093078AGGAGMKLIFGFLLFVAAVAITGGLYLVIRKPAQKKTDLEKLESVCRQIVHRIRQLDDYLARIYITAFFRMIPCSRKEQSNVSEKQSSGSDLPHDSGVIPAE
Ga0224527_10100063F047435AGGAGMSKLTLLAVLGLIYIGVVRLAYFTISVFFILFFGMSVWELIRTARQPVKHPFVAQ
Ga0224527_10100064F009261GAGGMILTPSNTGNLVAGAGLGIFAWSAFLKADKIPWLKNLLTTRRKEMTLDWIDKNKGISLLGLETINLGIHGILSANAVIFALGNTLLNIFMLWAYLPFRKMRARKKHVYNVLKGVA
Ga0224527_10100065F005296GGAGMAAWLLWLLPSFEAGFWSALIAGKLRDRGKTRELLVYGSRSRTSLPLIDERLRKAAGTPTKSQAFAARRIAAGLRWVANTRAMDYAILLGLRRIWPKGRTIRAEVKMCL
Ga0224527_10100066F012316AGGAGMSTTIIDQPTGPMHRCGKVWEGLRSLGTRGLSTVNRWRRHQDQNALERSLARIIETANCHRAKGLPKGSPAYVVLRDKVDARIQVFATKWGVDIAIIKAQAPALADLDNLCVPEKQIPAGLKLLAALLGTILSLVLLGAASGLVHAGHDWVMRLVLR
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Institute for Fundamental Biomedical Research
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