Scaffold Ga0222685_1005095

Overview

Basic Information

• Taxon OID: 3300022874
• Scaffold ID: Ga0222685_1005095
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1077
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3010
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031354	Metagenome / Metatranscriptome	182	Y
F059653	Metagenome / Metatranscriptome	133	Y
F091296	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222685_10050951	F059653	N/A	EYSNDNLLEKILLDKGITSGDTYVAANEKNIDLAAASLYFTLAAHPEFRDGKTSIKYNPVQLIAMARAIERKYGVNVATVDGAAIW
Ga0222685_10050952	F091296	GGAG	MVIKRYPHTATISYYGAGTTNSLGIYTEGTLVTVGIVCNIQPNTTRYMIGESGDMIGYNWDIMSPLFTGAGSVPDDAKITFYNKDHVIKLLYPYQKHVEVKC
Ga0222685_10050954	F031354	GGA	MKTTFDINDILYPIVNVASVKATIDGGVYRNKKPLNSELRDIVIIPLSNYSGDEIINEATFMANCYCKNFTNGTQDITKLRATANSVIAVIEAYNNTKNYDVFNITNQILLQDVDQMSMSYTNLRVECFIEK