Scaffold Ga0222685_1000820

Overview

Basic Information

• Taxon OID: 3300022874
• Scaffold ID: Ga0222685_1000820
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1077
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7686
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053745	Metagenome	140	Y
F064378	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222685_10008205	F064378	AGAAGG	MAVTTTNINVSGAVVRLGGTVISDTGNLDWYDVSPQGTDVGCTTGGVTVNYSLDLSDIFCDQNTVPVDVAITGETAAVEFSMLESTAENMKLALADFASSEDEDGVAYWLGVGGISTVSFTALELEITDNDTGYLTTWTFFRTICGGIETNFERENPTAFGVTFTAYADTSHSSGKQLFQVRQNKA
Ga0222685_10008207	F053745	AGGAGG	MAEPVKVTHNPRGQQIRKPSYLLELEAKWKKWTGIDDKDAFEAIKDLSGDLWGELRKLEAQLCKEIENRELPEDFKEFTKARIRDTWRDIIGHQKIGLDKLCIVVRKHLKEEK