Scaffold Ga0222685_1000405

Overview

Basic Information

• Taxon OID: 3300022874
• Scaffold ID: Ga0222685_1000405
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1077
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10514
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022145	Metagenome	215	Y
F034486	Metagenome / Metatranscriptome	174	Y
F044910	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222685_100040510	F044910	N/A	MQNDAHSKKIAAAVTALIGTTEIVAAQDDAYIYIHELIGDLSGAGNLIIKCGTRTVASFTLDAGQGITEQDEPGMDGVSRFECRPGEAFSLEVTGGTFNGAIDYSFRY
Ga0222685_10004054	F034486	N/A	MDEGDQVQQSLNQKKMSLAASEHAPVIIELIKDCMEQKGIVAKTEWETIVNAITLETQGTMLRNMVDLLEKIRKEGLHEKK
Ga0222685_10004055	F022145	N/A	MKAREIKKENYKVQIGYSEEAKKKKLLKFISKSGDEFEVSAEELSSMIIGGVNQETLEATFVEANKINVVEVGRQLECVLENDMKKGDKFNLNYVHPYPLEFAVIEEVMGIAKINMDVPAFTLTKEYIEEARKNIKPEQKNFIKKFYESFKNLNKK