Scaffold Ga0224526_1030713

Overview

Basic Information

• Taxon OID: 3300022872
• Scaffold ID: Ga0224526_1030713
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1151
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F012316	Metagenome	281	Y
F066360	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224526_10307131	F012316	AGGAG	MSTTIIDQPAGPMRRCGKVWEGLRSLGTRGISTVNLWRRHQDQNALERSLARIIETANGHRAKGLPKGSPAYIVLRETADAKIQVFSSKWSVDVAAVKAQAPALADLASLCVPDKQIPAGLKLLVGLLGMIVSLVLLGVASGLVHAGHDWVMRFVVR
Ga0224526_10307132	F005296	GGAG	MAAWLLWFLPSFEAGFWSALIAGKVRDRGKIRELLVYGRPARTYLPVIDERLCRAAGVPTKSQAFAARWIAAGLRWLANTRAMDYAILLGLKRAWPKGQTISTEVKMCL
Ga0224526_10307133	F066360	GGAGG	MILTPSNTGNLVAGAGLGIFAWGAFLKADKVPWLKKLMTTRRKDLSLDWIN