NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222629_1003854

Scaffold Ga0222629_1003854


Overview

Basic Information
Taxon OID3300022867 Open in IMG/M
Scaffold IDGa0222629_1003854 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2594
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052207Metagenome143Y
F061579Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0222629_10038541F052207N/AMFYNYIMSSVSDHVQLMKSQENKYDSVFNKREWLYINDTTTQYDQGTSIIETTSLSNNSKFLDYNSAYLSVPLLVTLTSNASEITGIADTDTLPYTKSVGFKQSFLSMVNSITVDLNGQPMVQQNQLIDMYNHFRLLTSESWNTQNRWSTIGFYPDVAESAGFSTADSKYAPAGQPANNDTLNLGLFERLGYILDDAGETFSSVAGSALSNLISKTEMAKLYISHVSNLTAGTADVKSPVVQYSVKATIMLKDLHPLFEVMPISKSLNFKIQIFWNNSVVTATHDGTDWSAQSSQYRAYNGTLPLMLNNFTDGFAGSTAGTLRASVYVGDTCHDSTQKTVTNNGLSTGGVGKQVELWVPAYQMLPDVEMSYAQNHLRDISYFDYYQFSLKNIGSGESFNHLVSNGISNLKAVLIVPLLHSLNNNVNAFDDGLPQLMGHINNFNVLVGGSNVLHQDSRYTYQQFNNEFFHEFGVNGNQSSGLGSSLIDFKGWLKKPYYYVNCSRVPMEQQKAYRSLQIKGTNSSSLAMDYVIFALYEKSFKLDVISGNIEKLD
Ga0222629_10038542F061579N/AMNITLDLSKGQLSKLRNGHGIRINPTMLGSGTDLIIDPMTYHNMSKKMDKGKGVVIKMGSNEIEMNKMEGTGLFAGAGNQSGKISRIKKANKWRDFSVDTAKQGIDVAKYGYDKYKEATNPVQSKLKKMFGFGDMEDMENVVEGGMISMSDIKKSYNKNVKNTKLGKAIRETAEKGLGEVYDKGVVKIGNTKHFSGIADVLKKGKVKNVSKLTQMSGLGLRLQGDGVMKDARFRKPITLGDGLTMGGMCCGCGMMNDKFFFQNQSL
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