NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222651_1057805

Scaffold Ga0222651_1057805


Overview

Basic Information
Taxon OID3300022866 Open in IMG/M
Scaffold IDGa0222651_1057805 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #369
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)774
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008895Metagenome / Metatranscriptome326Y
F082327Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0222651_10578051F008895N/ANNISVNNLNSNGITDNAMVRIDNNAPFGYMIFYRPSEVQRFIIRKQTINNISFSLTDTQGNELNVFSNDTQITLKIEYMYKPEMRSMEEGTINYELRKLSQIPMTKEAIQGAYNPETNEFIRE
Ga0222651_10578053F082327N/AMSQAVDAMAESLNYPNMKRRAVASRSYRVKISPNN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.