NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224532_1012004

Scaffold Ga0224532_1012004


Overview

Basic Information
Taxon OID3300022863 Open in IMG/M
Scaffold IDGa0224532_1012004 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E1 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1099
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009261Metagenome320Y
F093078Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0224532_10120041F093078AGGAGMKLIFGFLLFVAAVAITGGLYLVIRKPAQKKTDLEKLESVCRQIVHRIRQLDDYLAGIYTTAFFRMIPSSRKERSNVSEKQSSGSDLPHDSGVIPAE
Ga0224532_10120043F009261AGGAGMVITPSNSGNLVAGAGLGIFAWSAFLKADKIPWLKNLLTTRRKEMTLDWIDRNKGISLLGLEAINLGIHGILSANAVIFALGNTLLNIFMLWAYLPFRKMHARKKHAHNVLKGVA
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