Scaffold Ga0224532_1000012

Overview

Basic Information

• Taxon OID: 3300022863
• Scaffold ID: Ga0224532_1000012
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 1-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51243
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (86.49%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052557	Metagenome / Metatranscriptome	142	Y
F058535	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224532_100001270	F052557	GGA	MIAASFFDRWVWPAGGSGGIPGDVVATLIWVILAAIATSIFYPPLRRAVEKYVKRHFEEGTAELHAKLDHIIEHHPDIPPYHSKKQEKSNGH
Ga0224532_100001272	F058535	AGG	MTYEYTELYIPVGKKGWKELGAALVELPAQGWELFMAVPITGLTALVPGISGSRTVAIVHYFRREKA