Scaffold Ga0224528_1001786

Overview

Basic Information

• Taxon OID: 3300022861
• Scaffold ID: Ga0224528_1001786
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13426
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F010891	Metagenome	297	Y
F012316	Metagenome	281	Y
F093078	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224528_100178614	F010891	AGGAG	MTTKKQLTPEQRAMLNELVNGAFSSIAIHFLGDHLAKGIHKVADATQRTTDVTARVAGTAQVCAIPAARQAWTGFAGLFAKKAAVTPASL
Ga0224528_10017864	F093078	AGGAG	MKLIFGFLLFVAAVAITGGLYLVIRKPAQKKTDLEKLENVCRQIVHRIRQLDDYLARIYTTTLFRMIPSLHEERSTVPERRSSAAEFPHDNVIIPAE
Ga0224528_10017867	F005296	GGAG	MATWLFWLLPSYEAGFWSALLAGKLRDHGKTRELLVYGIRSRTHLPLIDERLRKVAGTPTKAQAFLVRHAAAFIRWLTNTRAIEHVLLIGFKRSWPKRRTIDSKVSLYL
Ga0224528_10017868	F012316	AGGAG	MSTTIIDQPAGPMRRCGKVWDGLRSLGTSGIGKFNTWSKRIDQNSLERALAQIIETANGHRAKGLPKGSPAYRVLAETADAKIQGFSGKWSVDVATIEAQAPALADLHDLCIPDKQVPAGVKLLVGLLGTILFLVLLGAASGLVHAGHDWVLRLIVR