Scaffold Ga0222679_1000090

Overview

Basic Information

• Taxon OID: 3300022858
• Scaffold ID: Ga0222679_1000090
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #939
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37599
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019930	Metagenome / Metatranscriptome	227	Y
F035608	Metagenome / Metatranscriptome	171	Y
F039470	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222679_100009011	F035608	AGG	MITDTNSVLRTYLTTSSTKVDPLIALVSDRIYCPRLPENAARPAVSYFTRGGTSNPHIEKVVSPSVQFNCWADNPIEAREVYRALFNALQGIQMVKVGSYYIMSAIEEVQGQDIVDELVPNYFQTLCFFSIMIRADV
Ga0222679_100009017	F039470	GGAGG	MAQTQVVTDSGISELILLWREELATGMESIVALNMATPCTAVVGSTYADPADTATHHTDGGLAIQAIDTVGGATVNTAGDTITFDHVLTVTATKNVAGIHVCNNDDDVAFIECCFNAVLAMENTDTLTIDGQSTINQA
Ga0222679_100009023	F019930	AGGAG	MRKLNLKDYTVIVRTPDQMKLGKFIDAEFPYPVKDSILNLLFVPALQLNGAELVKQNVLAMKLEQCKEDNILLEDEEYNRIKKAIDTFKGFGKNDVELVERINEAEKVEVEQK