NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222653_1005317

Scaffold Ga0222653_1005317


Overview

Basic Information
Taxon OID3300022857 Open in IMG/M
Scaffold IDGa0222653_1005317 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #419
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4235
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011140Metagenome294Y
F068498Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0222653_10053171F068498N/AMGNKRAIALANIVLLMREYQKKHNIKKQCVTNCQYFYDNFKANYPLNNIKVKAVIGISLNDDRTIIYRGHVVVEVDEKFILEPSYEVYSTDNIEYFDNIKQFMNTYKFPNKNDMKHLIKDFVSFTKLADAINNEELTITDTEYYNNQADYVEEKIKPFL
Ga0222653_10053173F011140N/AMNQFLIYMKNQGLSEKTINEHSRGLVKYKNLGGDLKWDEDKVIQFIKQNYNEGSSQKSITSTLSKYRHYKGKTTETIRQFLQQTNAEASLLQRQKNDKLRENLPDIDFNKLLNGYYRDKQYKSFVILYLLTNYNTRNKDLVARVVNNESDLNPNENFIFIRDKDVVYIRNDYKTKDKYGMKQDVIKSKKFFNSVKEVDNLLIDDGNLDRQVKKVTGGINQSTLFKILITKNNNLKSIAKASKARGTNMDTIASSYDIT

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