Basic Information | |
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Taxon OID | 3300022856 Open in IMG/M |
Scaffold ID | Ga0222671_1023030 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #797 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1272 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Ace Lake | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 13 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008123 | Metagenome / Metatranscriptome | 338 | Y |
F009454 | Metagenome | 317 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222671_10230301 | F008123 | GAG | MADETHSSVRITNVQVYEKLMEVNENQIEMFAELRGLKYLPEKVANMETRLAKVELIARLVYGVYGATLGAVAVGLVSLLNG |
Ga0222671_10230303 | F009454 | GGA | MYEEIEAAIAEVQQPRSRFQLERFVTGSHATPEMQYYQTCLELQDMIYKFQVAKIGVQKAELKIKRLRETKDEMKELKAQETEIGLRQTRLAMIGAERELNDLVAIFDTFETKFTRSEIEAAQPDYWNARLTGNAKAMLMGGTSVNAAHIEAMEQAGVLENFIEEVQQSKKELGL |
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