NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222671_1023030

Scaffold Ga0222671_1023030


Overview

Basic Information
Taxon OID3300022856 Open in IMG/M
Scaffold IDGa0222671_1023030 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #797
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1272
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008123Metagenome / Metatranscriptome338Y
F009454Metagenome317Y

Sequences

Protein IDFamilyRBSSequence
Ga0222671_10230301F008123GAGMADETHSSVRITNVQVYEKLMEVNENQIEMFAELRGLKYLPEKVANMETRLAKVELIARLVYGVYGATLGAVAVGLVSLLNG
Ga0222671_10230303F009454GGAMYEEIEAAIAEVQQPRSRFQLERFVTGSHATPEMQYYQTCLELQDMIYKFQVAKIGVQKAELKIKRLRETKDEMKELKAQETEIGLRQTRLAMIGAERELNDLVAIFDTFETKFTRSEIEAAQPDYWNARLTGNAKAMLMGGTSVNAAHIEAMEQAGVLENFIEEVQQSKKELGL

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