NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222691_1008896

Scaffold Ga0222691_1008896


Overview

Basic Information
Taxon OID3300022851 Open in IMG/M
Scaffold IDGa0222691_1008896 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1237
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1921
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006765Metagenome / Metatranscriptome365Y
F055713Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0222691_10088962F055713AGGAGMEKETNGHLYIANDNLKRIADALEEILRMVKKDQERSKKYMEDKDESTS
Ga0222691_10088963F006765GGAGGMKAQVKFEWRWLEEPDTIQNPAWVIKNALQAAGYTVVSFPDVQGVWDEDKPAHAGGPWDETRIPHEEITEE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.