Scaffold Ga0224552_1000076

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224552_1000076

Scaffold Ga0224552_1000076

Overview

Basic Information
Taxon OID	3300022850 Open in IMG/M
Scaffold ID	Ga0224552_1000076 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 1-5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	28440
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (19.51%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0474	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051687	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224552_100007624	F051687	N/A	MRNSGFKMDMSGIKRKQRELAKIPARIFKPEISDYFLRPSLNEAKRKTPVRDLSVIRDNQIGKPNCQFNAWEARGGNKEGITRQQFLADRAPARFLFQLQWVQVGYSLGVNVTASGQVLAATTRNHNEPEIPRGYGQWHGGDVKLTASICVPFLDAPARKYKPFTGREILTPIMAAQFPVYSRACARRMKRAVHAIAMSSN

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