Scaffold Ga0224531_1007488

Overview

Basic Information

• Taxon OID: 3300022849
• Scaffold ID: Ga0224531_1007488
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3218
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068368	Metagenome	124	N
F085039	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224531_10074881	F068368	GGAG	MQDEYALKNGINYRADGYAFCDRCGCNQIVNDRCLKCDVTPTEADRKLADEIRSRCYRTSAGRIPGCYDGRPESFDTERAACILAAMRVSGSKFVPVQPEPQAGVNTGCESRPDA
Ga0224531_10074886	F085039	N/A	FMHADCSSMAEALFAAVPELKLVDNALTTMETVYNDCLLTQQGITDLDGKNLAETMDNLQEGFRALTGHDCRPCDFNMDPGAGREPEDGEDEDEDAQQSAGEDGNQVAHPAED