NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222687_1070793

Scaffold Ga0222687_1070793


Overview

Basic Information
Taxon OID3300022844 Open in IMG/M
Scaffold IDGa0222687_1070793 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)618
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012504Metagenome280Y
F047500Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0222687_10707931F012504N/AQQKAYRSLQIKGTNSSSLAMDYVIFALYEKSFKLDVISGNIEKLD
Ga0222687_10707932F047500N/AMNITLDLSKGQLSKLRNGHGIRITPTMLGSGVDLIIDPMTYHNMAKKMDKGKGVVIKMGSNEIQMNKMEGTGLFAGSGNESGKISRVKKAGKWRDFSNDTARMGIDTAAYGYKEYQKAKNPIGSKIKSWFGGGDMEDMENVVEGG

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