Scaffold Ga0222632_1012813

Overview

Basic Information

• Taxon OID: 3300022842
• Scaffold ID: Ga0222632_1012813
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #46
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1545
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014790	Metagenome / Metatranscriptome	260	Y
F019731	Metagenome / Metatranscriptome	228	Y
F036785	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222632_10128131	F014790	AGGAG	MQKQIENEIEKFAKLTGLTERVTISHGTLYALLLQPERCDFFHGVIRTFYKDNINEDGGVNMYAVGDEFAFDFVEGNKDNYMGVDMEALTDDITEDAMNDMPAEVDIALNLESDSKE
Ga0222632_10128134	F019731	AGGAG	MADLDNILSNIDLEEQKIETEEKDWYCGTCEHGPMMDNDTNCTRCGEKHSASRHQEEMTGWEDEDIEAEVEEIF
Ga0222632_10128135	F036785	GGAG	MTNKINLVINMSILALLIYLAVAVKSLQKEVFWDKSIMKPAIGKYHGFAEGKVELRYNVQELLNNALKEAINQQGE