Basic Information | |
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Taxon OID | 3300022842 Open in IMG/M |
Scaffold ID | Ga0222632_1012813 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #46 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1545 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Ace Lake | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F014790 | Metagenome / Metatranscriptome | 260 | Y |
F019731 | Metagenome / Metatranscriptome | 228 | Y |
F036785 | Metagenome / Metatranscriptome | 169 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222632_10128131 | F014790 | AGGAG | MQKQIENEIEKFAKLTGLTERVTISHGTLYALLLQPERCDFFHGVIRTFYKDNINEDGGVNMYAVGDEFAFDFVEGNKDNYMGVDMEALTDDITEDAMNDMPAEVDIALNLESDSKE |
Ga0222632_10128134 | F019731 | AGGAG | MADLDNILSNIDLEEQKIETEEKDWYCGTCEHGPMMDNDTNCTRCGEKHSASRHQEEMTGWEDEDIEAEVEEIF |
Ga0222632_10128135 | F036785 | GGAG | MTNKINLVINMSILALLIYLAVAVKSLQKEVFWDKSIMKPAIGKYHGFAEGKVELRYNVQELLNNALKEAINQQGE |
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