NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222632_1005275

Scaffold Ga0222632_1005275


Overview

Basic Information
Taxon OID3300022842 Open in IMG/M
Scaffold IDGa0222632_1005275 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #46
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3009
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006365Metagenome / Metatranscriptome375Y
F015099Metagenome / Metatranscriptome257N
F076488Metagenome / Metatranscriptome118N
F077787Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0222632_10052751F076488GGAGMRTEYDEVKEILVKHEVDLDRDIDYMMETIVYGEPLFQELFEYFIGDMPYDVAKGRADLMSDEWIIDRVQALGLIKEEQNDPNGLPLNFTNRYHQEEA
Ga0222632_10052753F015099AGGAGMKHSSKNWQVIYRCKGSLAGCFVWASSQDNAEKKFRARKEFEYDPEFDREEDGNIRSIYEYVAPQPNTSKSKMDELEAFVKFPQFYPFLKKYDAGDEKALAKQIPLTPDNIAIINGIAKVIPITRRYRGPRLRGGYMGECHRQDAERVSIYAR
Ga0222632_10052754F006365GGAMKSIPPYVYHVWFKKSKKPTRMVAFDEEHIRDQSNGRLIKKIKKLPEEIEKIKLEPLGPKGCTVNQPADYDKGFKILKAWLDTQDGPPESVRKELRELFIDWQ
Ga0222632_10052759F077787AGGTGGMPGKKQFSVVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV

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