Scaffold Ga0222649_1002236

Overview

Basic Information

• Taxon OID: 3300022839
• Scaffold ID: Ga0222649_1002236
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #337
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4425
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020325	Metagenome / Metatranscriptome	224	Y
F057145	Metagenome	136	N
F074457	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222649_10022363	F057145	GAG	LGCRMSANTRLLRTAAESALDALELISFTEGFEAATNALDELSDIKHNFDEQQVAEILRWAAKELRGENAN
Ga0222649_10022364	F020325	AGG	MLIRNWSDLKYEVADKLFGKELDEAYKMGMRIGSEYATRRLSFEVSLKRNLTLTKTEARGYDHAIAAVARIKPEIASKTGASV
Ga0222649_10022368	F074457	N/A	LHDLATLPFLPSLHYLFHPHERDKMSINELIATNGKVWYKAGQLAERHRTIRIAQHISVPSEPAIGQPREMVFLDDLIAYLVDEDEK