Scaffold Ga0222711_1000356

Overview

Basic Information

• Taxon OID: 3300022837
• Scaffold ID: Ga0222711_1000356
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1699
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13827
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008123	Metagenome / Metatranscriptome	338	Y
F009218	Metagenome / Metatranscriptome	321	Y
F009786	Metagenome	313	Y
F020325	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222711_100035610	F009786	N/A	MEEGELMQPTFSEFIQQLELERNNISYRSHFTKPEVKVITKTLKVIPERFKKIYFHAGRYAAGDRDKLASEAWAEYEKQEDVQ
Ga0222711_100035620	F009218	GAGG	MLQKTLVKMFDGVFFLKDEPESATGASWKFRRKLIFGSYRLGFAMIIFGSLTFLVDQWGVGVTLITGGVSLISIITTAYTVSASWQDGRNNNQDWTNGDV
Ga0222711_100035622	F008123	GGAG	MAEEGTSVRITNVQVYEKLMEVNENQIEMFAELRGLKYLPNKVADMENRLSKVELIARLVYSVYGATLGAVAVALVSLLRG
Ga0222711_10003564	F020325	AGG	MLKIRNWSVFKDEVAELLFAKQLDEAYTAGIRIGAEFATRKLSFEVSLKRHLTLTKVESRGYDHAFVAINRAKEEIRNTTGASV