Scaffold Ga0222654_1001675

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222654_1001675

Scaffold Ga0222654_1001675

Overview

Basic Information
Taxon OID	3300022836 Open in IMG/M
Scaffold ID	Ga0222654_1001675 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #421
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8454
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (90.91%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059682	Metagenome	133	N
F093354	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222654_100167517	F059682	GAG	VQQSIESKRSQQAADEGLARELVYSYKWQAEKAPEWFRGVMDKLAKKYGQKYADDIRALMTLEKNRK
Ga0222654_10016752	F093354	GAGG	MRQLYSVNHQGAEKLAALVSKLSDAYIDAMLELEDAMESGNQTTILINGQELTLGADDFDEIKIAY

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