Scaffold Ga0222707_1000509

Overview

Basic Information

• Taxon OID: 3300022832
• Scaffold ID: Ga0222707_1000509
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1574
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11173
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → environmental samples → Organic Lake phycodnavirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005070	Metagenome	413	Y
F027015	Metagenome	196	Y
F048789	Metagenome	147	Y
F072015	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222707_100050910	F048789	N/A	MIGKKLHITELFDIPSTLKFQEDKLKDEFILLRGSSIAGNNNPELLGKFEIILLKMKNNKLISLQEYNEVLNILLEMEI
Ga0222707_100050919	F072015	N/A	MLSKSQYQTPNLEKLKLDFHCDDYERNPVDGMIQVLNRIQFKPFQYVNGLWFSKQHNVWSYDKERTFINHIRHQMTKVTVSIFEEHIGDKDLHSKKWLEWILNLLKPLDSLDSTI
Ga0222707_10005095	F005070	N/A	MNDIFGYDIDFTTNAGSEIQTYNSTKAPNVSPDSSVLLVCDQVNNEFSNLGILYAISPSVGIGSFIIDRPSQPIYSKLKNGSYNSLTFRILSS
Ga0222707_10005098	F027015	N/A	MSSILKEREVIKKNKKIIEEKDFNYDPSIKEDKVKGAFNTYMDSLVIKNFVIEQIYTRLKINKTMATQFVNKLDGNLVLILCKVIHEFIKDIQDKYVSINDYIFKTSFDELQGNYNVLQQQEKNNEIVNQNQAKQGEILQ