NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222706_1006390

Scaffold Ga0222706_1006390


Overview

Basic Information
Taxon OID3300022829 Open in IMG/M
Scaffold IDGa0222706_1006390 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1572
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1203
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018328Metagenome235Y
F047500Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0222706_10063901F047500N/AMNITLDLSKGQLSKLRNGHGIRISPTMLGSGVEMIIDPMTYHNIEKHMKKGKGIVIKMGSNEIEMNKMEGTGLFAGAGNQSGKISRVKKAKKWTGYANDTARMGIDTAKYGYEKYQEAKNPVQSGLKKMFGFGGDMEGGK
Ga0222706_10063902F018328N/ANNFTDGFAGSSAGTLRASVYVGDTCHDSTQKTVTNNGLSTGGVGKQVELWVPAYQMLPDVEMSYAQNHLRDISYHDYYQYGLKNIGSGESFNHLVSNGISNLKAVLIIPQLNTLNNNVNAFDDGLPQLMGHINNFNVLVGGSNVLHQDSRYTYQQFNNEFFHEFGINGNQSSGLGSSLIDFKGWLKKPYYYVNCSRVPMEQQNAYRSLQIKGTNSSSLAVDYVIFAIYSKSFSLDVISGNITKTD
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