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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022826 Open in IMG/M |
| Scaffold ID | Ga0222693_100398 Open in IMG/M |
| Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #1331 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10752 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 13 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039448 | Metagenome / Metatranscriptome | 163 | Y |
| F078142 | Metagenome / Metatranscriptome | 116 | Y |
| F098516 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222693_10039811 | F078142 | N/A | MSLGIDTFNAVYNSLTIARCKIRIGRTVIAKALCSGIGKLRENTDEGQFGSIDANVRLLATDEPDDEIKTGTVIEILQNGQDEKTGWVKARVGGRFPVGGLTRLGLEAVNE |
| Ga0222693_10039813 | F039448 | N/A | MNTTKAIELAMAETLRKYAEMGAAVVVRAWQSLESDGSWDEKTDREFPLIDVRCSPPGHDDNESTLQVQCAILMGTKTDDDKSHAFISSMYEAVQDVCDTLFAQYKTRVFTGDDKEELAYFLARVVAETSTDAFQFGGLTFGDGLAPADDNGINMIGITMIVHYGRSDF |
| Ga0222693_10039814 | F098516 | AGGAG | MTISKATSFGALTDHFAILETVHDAGTLADIMVLVASSKVPRAKTRADAQDANEDIAASAYSGNDAGAIYEVSSTYALKSGTLDLSDLVIGELAVQIMAESLGLTTANGGWPQITVAGFLGLQTITAPTSFTNQFTLPAISVIGMKQAQVLGFTVSAGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRIDETPAWALAAVLADSGDAAVFMAEVTQDPGEDQGQAAWHTAAGAASFNLARLAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |