Scaffold Ga0222646_103828

Overview

Basic Information

• Taxon OID: 3300022822
• Scaffold ID: Ga0222646_103828
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #293
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2761
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → environmental samples → Organic Lake phycodnavirus 2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018656	Metagenome	233	N
F060489	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_1038281	F060489	N/A	GTLPANANFSSVNTSTLNASTIDTSGDVSIGGQLDCDLDAFHYSAGNGRIDKGSGADVSWTLTKRGSNIQNGDSFRPKYTGKYSITLAIFFGSSSSGSVRVGLKLNGSEYNLNGGIGTYIVSADSANRDVNMFTGNMIVDAVAGQDIKAFVKAGTLRYYGSHSYLAGYYIGNL
Ga0222646_1038284	F018656	N/A	MPSKYLFLENAQRNLSVWDNLPTLSQSSRECYISVASVKLIFDDFPLFYSVRLKIDLPVMNYASSSNSIPVIAMLSQGTNNITSEGTTEIKVFELIHADQIQLFSNDNLKRAKFVLENESGTEIVLDVDDKLDIMLKIDYVDQQAVANQYISEVPKHL