Scaffold Ga0222646_100095

Overview

Basic Information

• Taxon OID: 3300022822
• Scaffold ID: Ga0222646_100095
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #293
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31728
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (10.53%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001913	Metagenome / Metatranscriptome	618	Y
F006002	Metagenome / Metatranscriptome	384	Y
F011526	Metagenome / Metatranscriptome	290	Y
F013571	Metagenome / Metatranscriptome	270	Y
F018086	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_1000952	F011526	N/A	MGNLEMIATIECFIHHKTGKEIRISQPKNHNHFFLLTKAYESCKKYFIKH
Ga0222646_10009529	F018086	N/A	MSNKSYLLGNVELHLEEIKKLSQYFESILTYNSQKELVPKKDENGKELKKLELNFSIFEEGNFGKNVSFTIPQTKEQRDNKEAKKYVANGKVYYASEDLQSFVQKAEKKAVAEVVDDLPF
Ga0222646_10009536	F013571	N/A	MELNLIFLVPNAMMLGWQYFKPEENFDFSEVNIYLFFVQIQYRWAK
Ga0222646_10009549	F006002	N/A	MSRAVYCYCKNTYSIECKDSQMKGCKAPDYWKQGIGSIHKTEEE
Ga0222646_10009552	F001913	N/A	MIKLILELLQNTNCKDEVVQLASGKNKFPDSFKELYKRQKQEAQWKK