Scaffold Ga0222673_1006207

Overview

Basic Information

• Taxon OID: 3300022821
• Scaffold ID: Ga0222673_1006207
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #801
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2495
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001894	Metagenome / Metatranscriptome	621	Y
F036509	Metagenome	169	N
F037002	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222673_10062071	F037002	N/A	MSYSLDTPYSSQVIFLNSQNSVYKSIDGEGIYQYNLKTPVQLPTNCKMLLSIQDAQIPNISPNVTSSNNQLSFSIPTFSKFFTVTVADEDGDRVYSADEFINVVNEKILPNALEQFNLYGVYQPTQAKVKWYCNYPFEIINNDSYPTTCTDLLGFQKDFNNNLIQTGNVLLSSKVNPSFHITMPSCVNFSGTRFIFLKFKNISVNNLNSNGLTDDAIVRIDNNVPFGYMIFYKPTEAHRFLVGKQTITSIQFTLTDTQGNELNIFSNDAQITLKIEYMYKPEMRSMEEGTLNYELRK
Ga0222673_10062072	F036509	N/A	MSLHQMTQKLTPQQSNVIPAGKFIYTDETFLVEQPVDKKGEAYPRQGKELVPAHFSYAHHNPDFTHVAGGNPIAENFNTYIYNAQTGYT
Ga0222673_10062074	F001894	N/A	VNESAKIANIHYIYQDRPNKERADKIVKRKLGRLGYKLDKANTDKDVLTAKRGNNVHINYTGTNINSPRDIISDVALATGVQRINPQFKERRQKTRNIMRQYGDDIDYSLGGHSLGGSIALNTLSQSKSIRDRTKVAHVFNAGYTKAFHESIKPTDKKIKRQLNDKVNIHRVKGDIVSAHANKETAFGNLFEYKHADNNADLSDKH