Scaffold Ga0222673_1004870

Overview

Basic Information

• Taxon OID: 3300022821
• Scaffold ID: Ga0222673_1004870
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #801
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3036
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018128	Metagenome	236	Y
F088315	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222673_10048701	F018128	N/A	RMRAMWSAVAITAINDTIRHAAKESKKHKGRALNNFALWANSRNGRDVISMAGIDPDKRVTNCMVAFAAKGVKTTTRRKKETNL
Ga0222673_10048708	F088315	AGGGGG	MPSDTDRTFVERAVMAGTPIEKIAGCLNLHDDTLRKHFRYEIMTGRERLKGDAVRVLVDSLTDNSLDAAKFVLGRVAGWTEKSVVDNTSSDKSMSPTPALDVSRLSPEALAEIVALGDATDTA