Scaffold Ga0222673_1000479

Overview

Basic Information

• Taxon OID: 3300022821
• Scaffold ID: Ga0222673_1000479
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #801
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17941
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075591	Metagenome / Metatranscriptome	118	Y
F098516	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222673_10004792	F098516	AGGAG	MTISKATSFGALTDHFAILETVHDAGTLADIMVLVASSKVRRAQNRADAQDANEDIAASAYSGNSAEEITEVSCTYALKSGTLDLSDLVIGELAVQIMAESLELTTANGGWPQITVTGYLGLETITAPTSYTNQFTLPAISVIGMKQAQVLGFTVTTGRLTGSKIGFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRIDDAPAWELAAVLADSGDGAVFMAEVTQDPQADEGQAVWHTASGAASFNLARLAS
Ga0222673_10004793	F075591	AGGA	MQDLAKLSELAEAEIESLRADGIDLTPAEIIEINALGHAVESPETRRLLARGAPVAIGGVYLWPMSLYAQDWFDRVGCHLDGNKQQTYALAYAMAHGRNEGEPLAMECREAEKTVKRWGKSLKCTFGELNVAVSQVLQQDEDAEQPPSETGGMTMGDFSAFLASACGGDPDFWERRCAAGYTHAVLDALCRQNSAEGHKTMADPRIKAERALGWKIECIKKSRKEVE