NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222622_10567875

Scaffold Ga0222622_10567875


Overview

Basic Information
Taxon OID3300022756 Open in IMG/M
Scaffold IDGa0222622_10567875 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)816
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009497Metagenome / Metatranscriptome317Y
F012897Metagenome / Metatranscriptome276N

Sequences

Protein IDFamilyRBSSequence
Ga0222622_105678751F012897AGGAGGMTALTTAAFLVALPLGAAWYLWHGHRFVAAALMAAAFAFIIGTKIRSDVRRKQEEEDLQEQAKSDGRYVAAHIEGLSQPQTPTAAELPAKSVAHLEEMWAQITRELKR
Ga0222622_105678752F009497N/ATSNPLALLISALRVIGILGFALLAGFFIVQDAYLETTLSVLTTLAWVAATTEAMDLVLERYS

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