Scaffold Ga0222622_10097896

Overview

Basic Information

• Taxon OID: 3300022756
• Scaffold ID: Ga0222622_10097896
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1797
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018210	Metagenome / Metatranscriptome	236	Y
F062916	Metagenome / Metatranscriptome	130	Y
F101514	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222622_100978962	F018210	AGGAGG	MIARFLCYLRHHHNPVRHPLGGFKCADCGEAGADLEQMGFVDGGYVMPIRRVFSRDRSEFTRTASWEPSAKGW
Ga0222622_100978963	F062916	N/A	MPASGLSNAAVVLLGVIALGSLAQAVFLLVLGRELMTMGRRLDAFQQRLVRDLHPLVEDITRATRSLSAASELTEQQARRIDGLVTTALTKLVEVERVVEDVLIPPANRVAGWLAALRSLRTLVDFYRGLRG
Ga0222622_100978964	F101514	AGGA	MKVGYRQAAWRLFQVTLTPLAKRTVRVTWADTELAGTPFQAKRLPLPVVRPKGTH