Scaffold Ga0222622_10011916

Overview

Basic Information

• Taxon OID: 3300022756
• Scaffold ID: Ga0222622_10011916
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4166
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017155	Metagenome	242	Y
F019678	Metagenome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222622_100119162	F017155	GGAG	VRSVASVLRRSVLLSLVLLGARSGRAEGQITGGIGAMTEILAAPLTGTGTSALQFGVIVPGTTTVTVLPRTSGGGEFRITGVKNRKSVDISFTLPTQLDGPAGASIPLSFNGNFAGLCEVDTSGACVVPSFVTWNPVTTPSFRDQPTRYQPGRKVYAFDAYQVYLGGTASPSATQRQGNYTASVGVLLVVN
Ga0222622_100119164	F019678	GGA	MTPRTGLALLFALILASWPTLAAAQGNSKGAVSISPVQNLAFGLLFPGRREAVPTTDVSRRAVVALAGSGPIDVTLVLPTALETPTGDRIPLSFSSSDAALLTTSGATLKQLDPLQVNRVQLGNDRTMLLVLGGTAATSAITRTGHYTARVTILVNHPGT