Scaffold Ga0214917_10141710

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10141710
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1290
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F029678	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_101417102	F000821	GGAG	MNEEYLRAKFNLCLDQAEKDIQEQDVANAIKNLERANRAMARIFNLEEDENE
Ga0214917_101417103	F029678	AGGAGG	MNKVTGFTIFNKQTGQKLATLPLTIPIGATVEAYERDGHSVSWGWEEGESE
Ga0214917_101417104	F001477	AGGAGG	VSNIYTIHPPKSDLILFYEVLTPDGENEWGGANAEQAIQWLAHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL
Ga0214917_101417105	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIINPDSRLTIAVHTRANAVPDVAGRTDYESSDEGDYGGEA