Scaffold Ga0214917_10099413

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10099413
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1700
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F031792	Metagenome	181	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100994132	F095162	AGTAGG	MSDAKRMASAAKAAVYYRNYRRARDRALIKLSHLHPEDYKELLEKEKVSDEQEGKAWIDLNGTTVAPRIVARAKARGITLAQADTNQGNNGGEA
Ga0214917_100994135	F031792	AGGAGG	MGYEPELNDPVFYAEEKEEEIKCFSCSDTLDQDDIVWADEEGQIGKEGNDNAWCVSCLPSEKDGEGNE
Ga0214917_100994136	F093528	AGGAGG	MNEETSVTHVVTVVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDVPDKAVNDVVKEIQEEAGE
Ga0214917_100994137	F005558	AGGAG	MDQNTMYWSELAELTHATQVERFNFCTCEDNEGNDNPYDDCPKEGK