NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10061061

Scaffold Ga0214917_10061061


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10061061 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2450
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027756Metagenome / Metatranscriptome193N
F030670Metagenome / Metatranscriptome184Y
F032548Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100610613F034827N/AMKYTITSRDKEAMVQFEDLKEGDLFSFFDPEAVKRGNHAVYLKIKNGTNNIVDLDDGRVFNFGEKKRVTISDPDEQRGNLVYKLNAKINIIV
Ga0214917_100610614F030670N/AMKVIRYIKELEDERGKPLNKWAVYEESYTQKGNWVFPDAKIVKTFETPYHARNWMENDGKRAY
Ga0214917_100610618F027756GAGGMKLENLIDRKILYLNYPINKFAIQEGKITEISPAKKCIKINSDWHLVDNIRIIELFKENERPKLGFGLPKNEKEAK
Ga0214917_100610619F032548N/AMKKKQNKDMEKAIQLLDELVFQADEDCPIECRSRHFQDILSEASEFVKEYK

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