NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10056027

Scaffold Ga0214917_10056027


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10056027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2613
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F041020Metagenome / Metatranscriptome160Y
F051874Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100560272F051874N/AMFVYYLYTLYIYISKQTNDISPLKNTIMTTLNLIEQKIEVALQAINSILPEGYYTTNTISSTDFGNSGYILVKKVCPINYIVDICKIRISDHSATNTVRQATEIMIDLVRFNLDELMARIDRAINPDNYENVEIRTLTNKVMESNFELGKKPFTTLSEPIFLGEVITKKGNLAHRYSWLKEDVRYEWRQKAN
Ga0214917_100560273F003786N/AMNNLTQYKPRNSDEQAIISARSNRIANMEQKEAYKQVLNVINSVFPMYGIDGDLAFYANIAKEIIKTFGQIAANEIEIAFRLFSAESLELDENVKFYGKANMHTIGKIINGYMIYRRKIIASHDNEVAALRLQAEWEEKARQDREKLHKEFPEMIANFKGKSWEDVPVYWYDLCLHFNMITYEEGEKKLLWEEAQDLAIKEPAEAMDLISIRSHAKKIEQGNKQRAVVIAQKLAVWRKVLKK
Ga0214917_100560275F041020N/AMNCKPIAMKKTPQEKAKELFDHYYIMIQEVGGELGQEILVSILAEQCALFFATQMQEEKYSQKKYKAVEYWEEVEFEIVNYAN
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Institute for Fundamental Biomedical Research
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