Scaffold Ga0214917_10038621

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10038621
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3429
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F005348	Metagenome / Metatranscriptome	403	Y
F012455	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100386211	F012455	GGA	MLNEIKNKVIRIQELRRSNAATAIPNKKKYTRKVKHKNGKTK
Ga0214917_1003862110	F000808	AGGAG	MEYNYSLTTSYDGELIHTLRVSDMLEAVDAWNKCVDYGTAKEYATYNLSDPMGKMYTKTFYTNGEVSVR
Ga0214917_1003862113	F003393	GAGG	MIDLENDDTIQIVDYVKVDLLTSGQLEIDDCILIGDEVVSIVDIVSLPDGYTLKVVNDFGERDIIEVGEYDQFDLMMLQ
Ga0214917_100386216	F005348	AGG	MINSVMSFDCNECNGKGLIFWGDNLDYNVEKCECDNFALGNLF