Scaffold Ga0214917_10035920

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10035920
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3610
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046819	Metagenome / Metatranscriptome	150	N
F047479	Metagenome / Metatranscriptome	149	N
F080837	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1003592012	F080837	AGG	MMNKEQGNKLKHEFFPKMMTTQVLKPYLKEAKRVGYTIEGSVRDGYIRVITDECEQHPAGEVVMRGVKKPYANIWIMGFNKLYWQEPTLEEMLGEKNK
Ga0214917_100359203	F046819	GGAGG	VNTFKPYTQTNVVDFYKELVKRWADDQLDQLHEYPITDRKNALGRLLDSSLDVFRDDIVEEIRKRNLSFLVD
Ga0214917_100359204	F047479	AGG	MMNKEQYLYIDSYNGKSKWISKKDFLNYTVGEDYDGVDSKGYYFEYKNDDGTIEKEYYNWRDNWEYIRKTPTHTTYKGEECIIVDFTNHKFGGAKLQEVK