Scaffold Ga0214917_10030922

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10030922
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4019
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025023	Metagenome / Metatranscriptome	203	N
F037220	Metagenome / Metatranscriptome	168	N
F058107	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100309225	F058107	AGGA	VITIGMDSFIVCQICDGEVRLDTKRIIGCLCDPDAPTWVGIEPDGRVLTFSQSHYEIVTDLGPRHNYD
Ga0214917_100309228	F037220	GAG	MSDEQDLLAGGGPKLPSLKFEKIGDVHSGIVTDVKKLEDRDPAGVAKTWPNGDPRFVYVITLKTEKNGDANLWARGAMITAIREAAKQASVTELTGNKISVKYSSDGEKKAGFNAPKLFAAKVEKVATDDRW
Ga0214917_100309229	F025023	AGAAGG	MTDLFEGPIMDKGVDRTCVLQLQSDFDSLRPHQRAMVKKIASECNEYGHSISLDSLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDAECAEQFAVICRAIRWDEQDIVWNTSTDSFGFPKQKASK