Scaffold Ga0214917_10030744

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10030744
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4037
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003962	Metagenome / Metatranscriptome	459	Y
F065536	Metagenome	127	Y
F090072	Metagenome / Metatranscriptome	108	N
F098901	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100307441	F065536	N/A	MDELADSTAPIEKAKNGREVFTEKIAEEIISACGSGFTLEKAGALVGVNPSTIRTWSQRKPDFGKRVETARKKHELSLLRDVQLAGEKSWQAKAWILERGYNWAQPSARLAVTQEHTHGISSNLASLLAGIAGRKKITASSEKRQIESGHNYIDIQPVTTKPENDLSNNKYCINKTNSVEQQQDAQAKTPKPRHKQMRRRKPRAESLAKYPTTTTPPANPPAPI
Ga0214917_1003074410	F003962	N/A	MAHDEGQEGRVLNQDREQLKLANRFISLLQKENAQLHGVLRLLGQLVDDMDANCSFEVFEHQWEGLTDEVNRLSGFFESHQKALQSLHDACPEAFDADEVDDES
Ga0214917_100307446	F098901	N/A	MKKKEQVGKRKYKVEFTQTETFIVDVYAKNEKEAKVLATRTFDAGDYQEQGDCEVELNCVYDVTNTDDPFYPQQR
Ga0214917_100307448	F090072	AGGAG	MTEEEIIKAYLSRLGKKGGSVKGPQKVRPKKHYQKAVGIRWAKYRERQAEAQPPKR