Scaffold Ga0214917_10030105

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10030105
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4099
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F022860	Metagenome / Metatranscriptome	212	Y
F060870	Metagenome	132	Y
F103171	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100301051	F103171	GAGG	MSEQFTKMELKAISRFLRKVYPGVTEQDDLWNLIAKVEHLAKGKHARPDRRRGDSPPSA
Ga0214917_100301052	F060870	GAG	MDGGWALILAAVVTAVGGVIVGVLQQFKKENHDDHAYVRGVLTMLYKSQNRIETKVDRVDERLTNHLESHASERMLDNERTVHQDGVEGNKQVSS
Ga0214917_100301054	F003378	AGGGGG	MNEVMLKANATVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSALLAGFMAVVQVIQKLAAASTDGELTKEEIQEAFGKK
Ga0214917_100301055	F022860	N/A	MKKLFDYLAEQTWTLAGVGLVLITLSGPTLRQALWLTGVALVLHSVLTFTGGKDE