Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10030105 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4099 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003378 | Metagenome / Metatranscriptome | 490 | Y |
F022860 | Metagenome / Metatranscriptome | 212 | Y |
F060870 | Metagenome | 132 | Y |
F103171 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214917_100301051 | F103171 | GAGG | MSEQFTKMELKAISRFLRKVYPGVTEQDDLWNLIAKVEHLAKGKHARPDRRRGDSPPSA |
Ga0214917_100301052 | F060870 | GAG | MDGGWALILAAVVTAVGGVIVGVLQQFKKENHDDHAYVRGVLTMLYKSQNRIETKVDRVDERLTNHLESHASERMLDNERTVHQDGVEGNKQVSS |
Ga0214917_100301054 | F003378 | AGGGGG | MNEVMLKANATVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSALLAGFMAVVQVIQKLAAASTDGELTKEEIQEAFGKK |
Ga0214917_100301055 | F022860 | N/A | MKKLFDYLAEQTWTLAGVGLVLITLSGPTLRQALWLTGVALVLHSVLTFTGGKDE |
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