Scaffold Ga0214917_10029682

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10029682
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4142
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F014590	Metagenome	261	Y
F031792	Metagenome	181	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100296822	F014590	GGAGG	VRTRHLQSVTHEHSVTTSNRSDVLSPFGPVRAGLTTSQTTPEVQLMELLNSLESVVDNLNFKSFTAYDTLVTAMEGVRVALSNTQTEEAFTDADRC
Ga0214917_100296823	F044984	GGAGG	MTDEATRRTRTATRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKTWISIDGTTVLSLGVHTRATGADDFAHTANAGENEGNNGGEA
Ga0214917_100296824	F001477	AGGAGG	VFCTLGRGRVQVMSNIYTIHPKKSDLILFYEVVEPDGDNTWGGANAQQAIQWLVNSPAGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL
Ga0214917_100296825	F000821	AGGAGG	MNEEYLKAKFDLCISEAEKDLQQEEIAEAIKNLRRANSAMARLFGLEEEENE
Ga0214917_100296827	F031792	GAGG	MSYEPDWNDPVFYAEEFEPAVKCFQCSDTLDRDDVVWADEEGQIQEKESNDTAWCVVCLQSEGESK