Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10029523 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10029523 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4157
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4157

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (85.71%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F022400	Metagenome	214	Y
F034906	Metagenome	173	Y
F048091	Metagenome	148	Y
F065721	Metagenome / Metatranscriptome	127	Y
F079781	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100295231	F079781	N/A	ELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFDLSAIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF
Ga0214917_1002952310	F065721	AGGAG	MTKYIANENGDWWEVVEGDSLYLIDTEWENIANKMEEENSTPNDDKFERFIWRYGTPVDINMKESV
Ga0214917_1002952313	F048091	GAGG	MIEHHFIIKYSKEGGWEWDTDSEEIRYPEGTVWNEQTQEWSSGYAGWNEAKGEAEYIDDDDLIGEQLGAMLEIANGAKALI
Ga0214917_100295233	F022400	AGG	MRRTVIESSHKITLRLVLGGKGESGNALSPFGPVRAGLITTPRTSEDQALTELLNSLEKQIAELSIKSLEVLNTFLKDTKHLVEHTSSFSNTDTTDSI
Ga0214917_100295234	F034906	AGGTGG	LSNTERRIETAKAQAVRQRNYRRARERALTRLANDYPYVYRKYLEQEKKVDESMGKKWLDIDGNTSLINTRTQ
Ga0214917_100295235	F011646	AGGGGG	MSNVLELRNGELKRVIFYEVSDAQNLAIWGGESPSEALKWYRNSPLDSKIYVQEWITDDEDAREVSPQIEITSIVLSTIANCMERWSN
Ga0214917_100295237	F011756	AGGAGG	MSEPRYLSGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSDCEDKRVMREKESK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10029523

Overview

Ecosystem & Geography

Associated Families

Sequences