Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10029523 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4157 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011646 | Metagenome / Metatranscriptome | 288 | Y |
F011756 | Metagenome / Metatranscriptome | 287 | Y |
F022400 | Metagenome | 214 | Y |
F034906 | Metagenome | 173 | Y |
F048091 | Metagenome | 148 | Y |
F065721 | Metagenome / Metatranscriptome | 127 | Y |
F079781 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214917_100295231 | F079781 | N/A | ELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFDLSAIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF |
Ga0214917_1002952310 | F065721 | AGGAG | MTKYIANENGDWWEVVEGDSLYLIDTEWENIANKMEEENSTPNDDKFERFIWRYGTPVDINMKESV |
Ga0214917_1002952313 | F048091 | GAGG | MIEHHFIIKYSKEGGWEWDTDSEEIRYPEGTVWNEQTQEWSSGYAGWNEAKGEAEYIDDDDLIGEQLGAMLEIANGAKALI |
Ga0214917_100295233 | F022400 | AGG | MRRTVIESSHKITLRLVLGGKGESGNALSPFGPVRAGLITTPRTSEDQALTELLNSLEKQIAELSIKSLEVLNTFLKDTKHLVEHTSSFSNTDTTDSI |
Ga0214917_100295234 | F034906 | AGGTGG | LSNTERRIETAKAQAVRQRNYRRARERALTRLANDYPYVYRKYLEQEKKVDESMGKKWLDIDGNTSLINTRTQ |
Ga0214917_100295235 | F011646 | AGGGGG | MSNVLELRNGELKRVIFYEVSDAQNLAIWGGESPSEALKWYRNSPLDSKIYVQEWITDDEDAREVSPQIEITSIVLSTIANCMERWSN |
Ga0214917_100295237 | F011756 | AGGAGG | MSEPRYLSGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSDCEDKRVMREKESK |
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