NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10029523

Scaffold Ga0214917_10029523


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10029523 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4157
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011646Metagenome / Metatranscriptome288Y
F011756Metagenome / Metatranscriptome287Y
F022400Metagenome214Y
F034906Metagenome173Y
F048091Metagenome148Y
F065721Metagenome / Metatranscriptome127Y
F079781Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100295231F079781N/AELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFDLSAIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF
Ga0214917_1002952310F065721AGGAGMTKYIANENGDWWEVVEGDSLYLIDTEWENIANKMEEENSTPNDDKFERFIWRYGTPVDINMKESV
Ga0214917_1002952313F048091GAGGMIEHHFIIKYSKEGGWEWDTDSEEIRYPEGTVWNEQTQEWSSGYAGWNEAKGEAEYIDDDDLIGEQLGAMLEIANGAKALI
Ga0214917_100295233F022400AGGMRRTVIESSHKITLRLVLGGKGESGNALSPFGPVRAGLITTPRTSEDQALTELLNSLEKQIAELSIKSLEVLNTFLKDTKHLVEHTSSFSNTDTTDSI
Ga0214917_100295234F034906AGGTGGLSNTERRIETAKAQAVRQRNYRRARERALTRLANDYPYVYRKYLEQEKKVDESMGKKWLDIDGNTSLINTRTQ
Ga0214917_100295235F011646AGGGGGMSNVLELRNGELKRVIFYEVSDAQNLAIWGGESPSEALKWYRNSPLDSKIYVQEWITDDEDAREVSPQIEITSIVLSTIANCMERWSN
Ga0214917_100295237F011756AGGAGGMSEPRYLSGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSDCEDKRVMREKESK

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