Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10019409 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5651 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (47.06%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024040 | Metagenome / Metatranscriptome | 207 | Y |
F030670 | Metagenome / Metatranscriptome | 184 | Y |
F032536 | Metagenome / Metatranscriptome | 179 | Y |
F034827 | Metagenome / Metatranscriptome | 173 | Y |
F039497 | Metagenome / Metatranscriptome | 163 | N |
F062447 | Metagenome / Metatranscriptome | 130 | N |
F082149 | Metagenome / Metatranscriptome | 113 | N |
F104482 | Metagenome / Metatranscriptome | 100 | N |
F104483 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214917_1001940910 | F024040 | GAGG | MNFYVTGHNWFAKVDIDTKKIDKSNWYNEACTRAIESILDQEEKEGVDLKIQDYDDFGLGIILLTWDEKNSKNEDEHRVILTSNVLANAGRWAEYKQVKDYEEQCKGFGL |
Ga0214917_1001940912 | F104483 | GGAG | MNKKIIDKIDLVIEDILNLQELIDFDTSDSSEYDLDSVINLLAEIRGRVANEEDEVEKIDLKQL |
Ga0214917_1001940916 | F039497 | N/A | MKEEDNFDCQAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNANTQGDEDEI |
Ga0214917_1001940917 | F082149 | AGG | MKLGLHIDWCIGRWFGRDNNLEIRVTLPTISLGFKKEDDDKWFGFKFNLRTDISFQSYEYGKIFTLILFGFGLKVSKFNI |
Ga0214917_100194093 | F030670 | N/A | MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDLIDAKLLKTFPSPYHARNWIENDGKRIN |
Ga0214917_100194094 | F034827 | N/A | MKYTITSQDTESLIEFDKIKEGEVFSFFDPESVQRGNHSIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL |
Ga0214917_100194096 | F104482 | N/A | MKNRKKKMTSEEFEKAMKAQGCFVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMSGKYFTECGFHWLGWIFEFQWNR |
Ga0214917_100194098 | F032536 | N/A | MSERKTFEELMRSFRFHKNPILNWAFAESNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYIGKEDDFVFNTTLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSKVGLEELYEVYPKAFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLILLGLYFRDLWD |
Ga0214917_100194099 | F062447 | AGGA | MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGVKSFSLQDIKEVLDSVRETLNKL |
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