NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10019409

Scaffold Ga0214917_10019409


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10019409 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5651
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F030670Metagenome / Metatranscriptome184Y
F032536Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F039497Metagenome / Metatranscriptome163N
F062447Metagenome / Metatranscriptome130N
F082149Metagenome / Metatranscriptome113N
F104482Metagenome / Metatranscriptome100N
F104483Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001940910F024040GAGGMNFYVTGHNWFAKVDIDTKKIDKSNWYNEACTRAIESILDQEEKEGVDLKIQDYDDFGLGIILLTWDEKNSKNEDEHRVILTSNVLANAGRWAEYKQVKDYEEQCKGFGL
Ga0214917_1001940912F104483GGAGMNKKIIDKIDLVIEDILNLQELIDFDTSDSSEYDLDSVINLLAEIRGRVANEEDEVEKIDLKQL
Ga0214917_1001940916F039497N/AMKEEDNFDCQAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNANTQGDEDEI
Ga0214917_1001940917F082149AGGMKLGLHIDWCIGRWFGRDNNLEIRVTLPTISLGFKKEDDDKWFGFKFNLRTDISFQSYEYGKIFTLILFGFGLKVSKFNI
Ga0214917_100194093F030670N/AMKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDLIDAKLLKTFPSPYHARNWIENDGKRIN
Ga0214917_100194094F034827N/AMKYTITSQDTESLIEFDKIKEGEVFSFFDPESVQRGNHSIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL
Ga0214917_100194096F104482N/AMKNRKKKMTSEEFEKAMKAQGCFVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMSGKYFTECGFHWLGWIFEFQWNR
Ga0214917_100194098F032536N/AMSERKTFEELMRSFRFHKNPILNWAFAESNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYIGKEDDFVFNTTLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSKVGLEELYEVYPKAFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLILLGLYFRDLWD
Ga0214917_100194099F062447AGGAMKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGVKSFSLQDIKEVLDSVRETLNKL

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