Scaffold Ga0214917_10019325

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10019325
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5665
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Candidimonas → Candidimonas nitroreducens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061549	Metagenome	131	Y
F085230	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100193255	F085230	AGGAG	MKVKELIALLQQCNPETEVYTFNDHDIHAIHAVDEIDEWVHLNLGEQQ
Ga0214917_100193256	F061549	AGGAG	MKYRVQVVMSYWQTVEVEADSSADAANKAYDEFDITKARVGEGQTYDTELIDEVKYVVRNHNHTVLGVFDNEHDAEKDAKEYRYQTGNPAYVDKEHEDES